STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO03279.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)    
Predicted Functional Partners:
KOO03280.1
GTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.950
KOO05539.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.854
KOO03526.1
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.830
KOO05558.1
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.819
KOO03265.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.817
tolC
Trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.738
KOO04566.1
Copper transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.734
KOO05538.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.631
KOO04318.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.597
KOO02960.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
  0.588
Your Current Organism:
Vibrio nereis
NCBI taxonomy Id: 693
Other names: ATCC 25917, Beneckea nereida, Beneckea nereis, CAIM 322, CCUG 28585, CIP 103194, DSM 19584, IFO 15637, JCM 21190, LMG 3895, LMG:3895, NBRC 15637, NCCB 73020, V. nereis, strain 80
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