STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL49605.1Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. (524 aa)    
Predicted Functional Partners:
SHM46289.1
Tetratricopeptide repeat-containing protein.
   
 0.848
SHL49562.1
Hypothetical protein.
       0.727
SHM52248.1
Aspartate kinase.
    
  0.692
SHM52212.1
Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.
    
  0.692
SHL49646.1
dCMP deaminase.
       0.687
SHL49692.1
HupE / UreJ protein.
       0.671
SHK96342.1
Gliding motility-associated C-terminal domain-containing protein.
   
  0.495
SHL03969.1
Ig-like domain-containing protein.
   
  0.495
SHK98471.1
Por secretion system C-terminal sorting domain-containing protein.
   
  0.495
SHK98508.1
Por secretion system C-terminal sorting domain-containing protein.
   
  0.495
Your Current Organism:
Flavobacterium xanthum
NCBI taxonomy Id: 69322
Other names: ACAM 81, Cytophaga xantha, DSM 3661, F. xanthum, IFO 14972, JCM 20358, LMG 8372, LMG:8372, NBRC 14972, NCIMB 2069
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