STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM11036.1TonB dependent receptor. (602 aa)    
Predicted Functional Partners:
SHL19227.1
Outer membrane transport energization protein TonB.
 
 0.906
SHM10967.1
Tetratricopeptide repeat-containing protein.
 
   
 0.905
SHL21959.1
CarboxypepD_reg-like domain-containing protein.
  
    0.771
SHL81551.1
Family of unknown function.
  
     0.746
SHM29912.1
Hypothetical protein.
  
     0.746
SHL02363.1
Protein of unknown function.
  
     0.745
SHM07351.1
Hypothetical protein.
  
     0.744
SHM30004.1
Protein of unknown function.
  
     0.743
SHL72611.1
Hypothetical protein.
  
     0.742
SHL96078.1
Hypothetical protein.
  
     0.738
Your Current Organism:
Flavobacterium xanthum
NCBI taxonomy Id: 69322
Other names: ACAM 81, Cytophaga xantha, DSM 3661, F. xanthum, IFO 14972, JCM 20358, LMG 8372, LMG:8372, NBRC 14972, NCIMB 2069
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