Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL04466.1 | SHM19378.1 | SAMN05443669_1001226 | SAMN05443669_10251 | Cyanophycin synthetase; Belongs to the MurCDEF family. | Glycosyl transferase family 4. | 0.867 |
SHL04466.1 | SHM47514.1 | SAMN05443669_1001226 | SAMN05443669_10391 | Cyanophycin synthetase; Belongs to the MurCDEF family. | Hypothetical protein. | 0.867 |
SHL04466.1 | SHM64806.1 | SAMN05443669_1001226 | SAMN05443669_10538 | Cyanophycin synthetase; Belongs to the MurCDEF family. | Hypothetical protein. | 0.931 |
SHL04466.1 | SHM72112.1 | SAMN05443669_1001226 | SAMN05443669_10615 | Cyanophycin synthetase; Belongs to the MurCDEF family. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.993 |
SHL04466.1 | murD | SAMN05443669_1001226 | SAMN05443669_1005102 | Cyanophycin synthetase; Belongs to the MurCDEF family. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.988 |
SHL04466.1 | murE | SAMN05443669_1001226 | SAMN05443669_1005100 | Cyanophycin synthetase; Belongs to the MurCDEF family. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.576 |
SHL04466.1 | murF | SAMN05443669_1001226 | SAMN05443669_1003126 | Cyanophycin synthetase; Belongs to the MurCDEF family. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.963 |
SHL04466.1 | murG | SAMN05443669_1001226 | SAMN05443669_1005104 | Cyanophycin synthetase; Belongs to the MurCDEF family. | UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.931 |
SHL15934.1 | SHM04275.1 | SAMN05443669_100324 | SAMN05443669_102064 | UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. | Hypothetical protein. | 0.809 |
SHL15934.1 | SHM19378.1 | SAMN05443669_100324 | SAMN05443669_10251 | UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. | Glycosyl transferase family 4. | 0.602 |
SHL15934.1 | SHM47514.1 | SAMN05443669_100324 | SAMN05443669_10391 | UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. | Hypothetical protein. | 0.602 |
SHM04275.1 | SHL15934.1 | SAMN05443669_102064 | SAMN05443669_100324 | Hypothetical protein. | UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. | 0.809 |
SHM04275.1 | SHM19378.1 | SAMN05443669_102064 | SAMN05443669_10251 | Hypothetical protein. | Glycosyl transferase family 4. | 0.731 |
SHM04275.1 | SHM47514.1 | SAMN05443669_102064 | SAMN05443669_10391 | Hypothetical protein. | Hypothetical protein. | 0.693 |
SHM19378.1 | SHL04466.1 | SAMN05443669_10251 | SAMN05443669_1001226 | Glycosyl transferase family 4. | Cyanophycin synthetase; Belongs to the MurCDEF family. | 0.867 |
SHM19378.1 | SHL15934.1 | SAMN05443669_10251 | SAMN05443669_100324 | Glycosyl transferase family 4. | UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. | 0.602 |
SHM19378.1 | SHM04275.1 | SAMN05443669_10251 | SAMN05443669_102064 | Glycosyl transferase family 4. | Hypothetical protein. | 0.731 |
SHM19378.1 | SHM47514.1 | SAMN05443669_10251 | SAMN05443669_10391 | Glycosyl transferase family 4. | Hypothetical protein. | 0.974 |
SHM19378.1 | SHM64806.1 | SAMN05443669_10251 | SAMN05443669_10538 | Glycosyl transferase family 4. | Hypothetical protein. | 0.561 |
SHM19378.1 | SHM72112.1 | SAMN05443669_10251 | SAMN05443669_10615 | Glycosyl transferase family 4. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.886 |
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