Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ32920.1Lipoprotein. (137 aa)    
Predicted Functional Partners:
AGZ32921.1
Hypothetical protein; COG4324 Predicted aminopeptidase.
       0.746
AGZ32919.1
Hypothetical protein.
      
0.675
AGZ37831.1
COG2261 Predicted membrane protein.
   
  
 0.629
AGZ36931.1
Hypothetical protein; COG3134 Predicted outer membrane lipoprotein.
   
  
 0.628
AGZ33576.1
Metallopeptidase, zinc binding protein; COG2321 Predicted metalloprotease.
      
 0.615
AGZ36626.1
Hypothetical protein; COG0392 Predicted integral membrane protein.
      
 0.584
AGZ36029.1
Amidohydrolase 2.
   
    0.447
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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