Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGZ32926.1Peptidase M3A and M3B, thimet/oligopeptidase F; COG0339 Zn-dependent oligopeptidases. (669 aa)    
Predicted Functional Partners:
AGZ32927.1
Radical SAM domain-containing protein; COG1533 DNA repair photolyase.
       0.618
AGZ32924.1
Oligopeptidase A; COG0339 Zn-dependent oligopeptidases.
 
    
0.599
AGZ32925.1
Hypothetical protein; COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain.
       0.581
AGZ32922.1
HAD family hydrolase; COG0546 Predicted phosphatases.
  
    0.510
AGZ32923.1
Transferase; COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.
       0.476
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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