STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabD1Succinate-semialdehyde dehydrogenase I; COG1012 NAD-dependent aldehyde dehydrogenases. (480 aa)    
Predicted Functional Partners:
AGZ33061.1
COG0160 4-aminobutyrate aminotransferase and related aminotransferases.
 
 0.954
sdhA
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
   
 0.921
AGZ37286.1
COG0160 4-aminobutyrate aminotransferase and related aminotransferases.
 
 0.919
AGZ35896.1
Class III aminotransferase; COG0160 4-aminobutyrate aminotransferase and related aminotransferases.
 
 0.918
AGZ35219.1
COG1012 NAD-dependent aldehyde dehydrogenases.
  
  
 
0.915
sdhB
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
   
 
 0.912
AGZ32985.1
Succinate CoA transferase; COG0427 Acetyl-CoA hydrolase.
  
 
 0.906
AGZ36045.1
COG2142 Succinate dehydrogenase, hydrophobic anchor subunit.
   
 
 0.905
AGZ36046.1
COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.
   
 
  0.905
AGZ37289.1
Carbon starvation induced protein.
  
 
  0.904
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.