Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGZ33101.1Glucose-methanol-choline oxidoreductase; COG2303 Choline dehydrogenase and related flavoproteins. (532 aa)    
Predicted Functional Partners:
AGZ33103.1
COG1012 NAD-dependent aldehyde dehydrogenases.
 
  
 0.964
AGZ33102.1
Hypothetical protein.
 
     0.942
AGZ33104.1
COG1309 Transcriptional regulator.
 
  
 0.932
coaD
COG0669 Phosphopantetheine adenylyltransferase.
     
 0.753
AGZ35053.1
Gluconate 2-dehydrogenase; COG2010 Cytochrome c, mono- and diheme variants.
  
 
 0.649
AGZ33574.1
COG0405 Gamma-glutamyltransferase.
 
   
 0.638
AGZ35949.1
Hypothetical protein.
    
 0.631
AGZ33099.1
COG1145 Ferredoxin.
    
  0.613
AGZ35327.1
Beta-lactamase domain-containing protein; COG2015 Alkyl sulfatase and related hydrolases.
     
 0.496
AGZ33005.1
Cellulose synthase regulator protein.
    
  0.467
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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