STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33227.116S ribosomal RNA methyltransferase RsmE; COG1385 Uncharacterized protein conserved in bacteria. (235 aa)    
Predicted Functional Partners:
tatB
COG1826 Sec-independent protein secretion pathway components.
       0.803
AGZ33228.1
TatC; COG0805 Sec-independent protein secretion pathway component TatC.
       0.790
tatA
Twin arginine translocase protein A; COG1826 Sec-independent protein secretion pathway components.
       0.790
prmA
COG2264 Ribosomal protein L11 methylase.
  
  
 0.618
rlmL
23S rRNA m(2)G2445 methyltransferase; COG0116 Predicted N6-adenine-specific DNA methylase.
 
  
 0.606
hisE
COG0140 Phosphoribosyl-ATP pyrophosphohydrolase.
       0.536
hisI
COG0139 Phosphoribosyl-AMP cyclohydrolase.
       0.536
AGZ34408.1
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
 
     0.531
AGZ33226.1
COG0840 Methyl-accepting chemotaxis protein.
       0.524
AGZ34302.1
COG3139 Uncharacterized protein conserved in bacteria.
  
     0.501
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.