STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33227.116S ribosomal RNA methyltransferase RsmE; COG1385 Uncharacterized protein conserved in bacteria. (235 aa)    
Predicted Functional Partners:
tatB
COG1826 Sec-independent protein secretion pathway components.
       0.878
AGZ33228.1
TatC; COG0805 Sec-independent protein secretion pathway component TatC.
       0.813
tatA
Twin arginine translocase protein A; COG1826 Sec-independent protein secretion pathway components.
       0.813
hisE
COG0140 Phosphoribosyl-ATP pyrophosphohydrolase.
       0.713
hisI
COG0139 Phosphoribosyl-AMP cyclohydrolase.
       0.713
ubiE
COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.
     
 0.667
AGZ33233.1
Ubiquinone biosynthetic 2-octaprenylphenol hydroxylase; COG0661 Predicted unusual protein kinase.
       0.656
AGZ33234.1
Sterol-binding domain-containing protein; COG3165 Uncharacterized protein conserved in bacteria.
       0.656
AGZ33236.1
Polyhydroxyalkanoic acid system protein.
       0.612
prmA
COG2264 Ribosomal protein L11 methylase.
  
  
 0.557
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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