STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33240.1Poly(3-hydroxyalkanoic acid) synthase 2; COG3243 Poly(3-hydroxyalkanoate) synthetase. (560 aa)    
Predicted Functional Partners:
AGZ33242.1
poly(R)-hydroxyalkanoic acid synthase, class II; COG3243 Poly(3-hydroxyalkanoate) synthetase.
 
  
 
0.944
AGZ36407.1
Dehydratase; COG2030 Acyl dehydratase.
 
  
 0.936
fadB
Multifunctional fatty acid oxidation complex subunit alpha; COG1024 Enoyl-CoA hydratase/carnithine racemase.
     
 0.918
AGZ33241.1
Poly(3-hydroxyalkanoate) depolymerase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
  
 0.770
AGZ33239.1
COG1309 Transcriptional regulator.
  
    0.763
AGZ33133.1
Sporulation domain-containing protein; COG3087 Cell division protein.
      0.427
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.