STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33289.1COG2964 Uncharacterized protein conserved in bacteria. (213 aa)    
Predicted Functional Partners:
AGZ33291.1
COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
  
  
 0.589
AGZ33287.1
Hypothetical protein; COG1451 Predicted metal-dependent hydrolase.
  
    0.574
AGZ33288.1
COG4519 Uncharacterized protein conserved in bacteria.
       0.574
AGZ36158.1
Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.528
AGZ33290.1
Hypothetical protein; COG1171 Threonine dehydratase.
       0.525
AGZ36291.1
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
      
 0.503
AGZ33286.1
Response regulator receiver modulated; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
       0.469
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.