STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33293.1YccS/YhfK family integral membrane protein; COG1289 Predicted membrane protein. (727 aa)    
Predicted Functional Partners:
AGZ33294.1
COG2081 Predicted flavoproteins.
       0.727
AGZ33295.1
COG0513 Superfamily II DNA and RNA helicases.
       0.646
AGZ35832.1
Transcriptional regulator MvaT, P16 subunit.
  
     0.623
AGZ32819.1
Hypothetical protein.
  
     0.617
AGZ36375.1
Putative transcriptional regulator, MvaT P16 subunit.
  
     0.615
AGZ33775.1
Transcriptional regulator MvaT, P16 subunit.
  
     0.606
AGZ37213.1
Hypothetical protein.
  
     0.582
AGZ33175.1
Hypothetical protein; COG3264 Small-conductance mechanosensitive channel.
  
     0.581
AGZ36925.1
Scaffold protein; COG0822 NifU homolog involved in Fe-S cluster formation.
   
    0.535
AGZ36832.1
COG3081 Nucleoid-associated protein.
  
     0.488
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.