STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33299.1COG1960 Acyl-CoA dehydrogenases. (43 aa)    
Predicted Functional Partners:
AGZ35906.1
COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
   
 0.785
fadB
Multifunctional fatty acid oxidation complex subunit alpha; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.781
AGZ33297.1
Hypothetical protein; COG0312 Predicted Zn-dependent proteases and their inactivated homologs.
       0.675
AGZ33298.1
Peptidase U62 modulator of DNA gyrase; COG0312 Predicted Zn-dependent proteases and their inactivated homologs.
       0.675
AGZ36055.1
COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.574
AGZ37524.1
COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.574
AGZ36056.1
COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.565
AGZ37523.1
COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.565
AGZ33612.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 0.547
AGZ36057.1
COG0644 Dehydrogenases (flavoproteins).
  
 
 0.527
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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