STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
putATrifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; COG0506 Proline dehydrogenase. (1317 aa)    
Predicted Functional Partners:
AGZ33128.1
COG0345 Pyrroline-5-carboxylate reductase.
   
 0.977
AGZ37118.1
COG0334 Glutamate dehydrogenase/leucine dehydrogenase.
  
 
 0.971
proA
COG0014 Gamma-glutamyl phosphate reductase.
    
 0.971
AGZ34037.1
Integral membrane sensor hybrid histidine kinase; COG0591 Na+/proline symporter.
  
  
 0.968
gltB
COG0067 Glutamate synthase domain 1.
  
 
 0.967
AGZ37102.1
COG0263 Glutamate 5-kinase.
    
 0.967
AGZ33304.1
Major sodium:proline symporter; COG0591 Na+/proline symporter.
  
  
 0.958
AGZ33529.1
Multi-sensor signal transduction histidine kinase; COG0591 Na+/proline symporter.
  
  
 0.949
AGZ36346.1
Agmatinase; COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family.
  
 
 0.942
AGZ34438.1
COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
  
 
 0.939
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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