Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGZ33304.1Major sodium:proline symporter; COG0591 Na+/proline symporter. (492 aa)    
Predicted Functional Partners:
putA
Trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; COG0506 Proline dehydrogenase.
  
  
 0.958
AGZ37321.1
Amino acid carrier protein; COG1115 Na+/alanine symporter.
  
  
 0.657
trpA
COG0159 Tryptophan synthase alpha chain.
      
 0.568
AGZ33305.1
COG2961 Protein involved in catabolism of external DNA.
       0.493
AGZ32911.1
COG0133 Tryptophan synthase beta chain.
      
 0.467
AGZ33180.1
COG1292 Choline-glycine betaine transporter.
 
  
 0.454
AGZ37663.1
COG1292 Choline-glycine betaine transporter.
 
  
 0.451
AGZ33858.1
Hypothetical protein.
       0.447
AGZ34045.1
Bile acid:sodium symporter; COG0385 Predicted Na+-dependent transporter.
  
  
 0.427
AGZ36105.1
COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins.
   
    0.417
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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