STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33305.1COG2961 Protein involved in catabolism of external DNA. (278 aa)    
Predicted Functional Partners:
ksgA
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; COG0030 Dimethyladenosine transferase (rRNA methylation).
     
 0.674
AGZ36830.1
23S rRNA mA1618 methyltransferase; COG3129 Predicted SAM-dependent methyltransferase.
      
 0.669
AGZ33307.1
Glycosyl transferase, group 1; COG0438 Glycosyltransferase.
       0.542
AGZ33308.1
Mig-14 family protein.
       0.542
AGZ33309.1
LmbE family protein.
       0.542
AGZ33306.1
Carbamoyltransferase; COG2192 Predicted carbamoyl transferase, NodU family.
       0.527
AGZ33304.1
Major sodium:proline symporter; COG0591 Na+/proline symporter.
       0.493
AGZ33310.1
Hypothetical protein; COG0438 Glycosyltransferase.
       0.458
AGZ33176.1
COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain.
       0.410
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.