Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGZ33306.1Carbamoyltransferase; COG2192 Predicted carbamoyl transferase, NodU family. (585 aa)    
Predicted Functional Partners:
AGZ33307.1
Glycosyl transferase, group 1; COG0438 Glycosyltransferase.
 
  
 0.967
AGZ33308.1
Mig-14 family protein.
  
  
 0.957
AGZ33309.1
LmbE family protein.
 
   
 0.902
AGZ37484.1
Lipopolysaccharide core heptose(I) kinase RfaP.
 
  
 0.879
AGZ37485.1
Lipopolysaccharide core biosynthesis protein WaaG; COG0438 Glycosyltransferase.
 
  
 0.877
AGZ33310.1
Hypothetical protein; COG0438 Glycosyltransferase.
  
  
 0.861
AGZ37483.1
COG0515 Serine/threonine protein kinase.
 
     0.851
AGZ37486.1
Lipopolysaccharide heptosyltransferase I; COG0859 ADP-heptose:LPS heptosyltransferase.
 
  
 0.787
AGZ37481.1
COG0515 Serine/threonine protein kinase.
 
   
 0.783
AGZ37482.1
Lipopolysaccharide kinase.
 
  
 0.779
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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