Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33308.1Mig-14 family protein. (298 aa)    
Predicted Functional Partners:
AGZ33306.1
Carbamoyltransferase; COG2192 Predicted carbamoyl transferase, NodU family.
  
  
 0.957
AGZ33307.1
Glycosyl transferase, group 1; COG0438 Glycosyltransferase.
  
  
 0.954
AGZ33310.1
Hypothetical protein; COG0438 Glycosyltransferase.
  
  
 0.923
AGZ33309.1
LmbE family protein.
  
  
 0.906
AGZ33311.1
Hypothetical protein.
     
 0.668
AGZ33305.1
COG2961 Protein involved in catabolism of external DNA.
       0.542
AGZ33315.1
Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.487
AGZ33312.1
COG0438 Glycosyltransferase.
     
 0.434
AGZ35207.1
COG2990 Uncharacterized protein conserved in bacteria.
  
  
 0.434
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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