Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33411.1TonB-dependent copper receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport. (685 aa)    
Predicted Functional Partners:
AGZ33410.1
Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.
  
  
 0.819
AGZ33983.1
Outer membrane protein H1.
     
 0.771
AGZ33412.1
Hypothetical protein.
  
  
 0.749
AGZ33413.1
COG2847 Uncharacterized protein conserved in bacteria.
  
    0.727
AGZ36607.1
Protein TolA.
 
 
 0.708
AGZ37199.1
COG0789 Predicted transcriptional regulators.
  
   
 0.696
AGZ37806.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
 
 0.646
AGZ33251.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
 
 0.604
AGZ33414.1
Hypothetical protein.
       0.562
AGZ34331.1
OmpF family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
     
 0.531
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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