Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGZ33450.1AMP nucleosidase; COG0775 Nucleoside phosphorylase. (487 aa)    
Predicted Functional Partners:
AGZ37192.1
COG1816 Adenosine deaminase.
 
 
 0.947
AGZ36105.1
COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins.
   
 0.916
AGZ34995.1
Decarboxylase family protein; COG1611 Predicted Rossmann fold nucleotide-binding protein.
   
 
 0.914
AGZ37157.1
Multi-copper polyphenol oxidoreductase, laccase.
    
 0.904
AGZ35783.1
COG0015 Adenylosuccinate lyase.
   
 
  0.901
AGZ33329.1
Metallo-phosphoesterase; COG1409 Predicted phosphohydrolases.
     
  0.900
mazG
Nucleoside triphosphate pyrophosphohydrolase; COG1694 Predicted pyrophosphatase.
     
  0.900
AGZ35871.1
5'-nucleotidase.
    
  0.900
AGZ36088.1
COG3123 Uncharacterized protein conserved in bacteria.
     
  0.900
surE
5'(3')-nucleotidase/polyphosphatase; COG0496 Predicted acid phosphatase.
     
  0.900
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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