Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGZ33451.1Pseudouridine synthase; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases. (211 aa)    
Predicted Functional Partners:
AGZ33450.1
AMP nucleosidase; COG0775 Nucleoside phosphorylase.
       0.878
AGZ36910.1
GTP-binding protein Der; COG1160 Predicted GTPases.
 
  
 0.630
cmk
COG0283 Cytidylate kinase.
 
  
 0.627
AGZ33449.1
COG1960 Acyl-CoA dehydrogenases.
   
   0.507
AGZ36309.1
Segregation and condensation protein B; COG1386 Predicted transcriptional regulator containing the HTH domain.
  
  
 0.490
AGZ37158.1
RluA family pseudouridine synthase; COG0564 Pseudouridylate synthases, 23S RNA-specific.
 
 
 0.489
AGZ34858.1
COG0708 Exonuclease III.
  
    0.478
AGZ35595.1
COG0708 Exonuclease III.
  
    0.478
AGZ37791.1
Exodeoxyribonuclease III Xth; COG0708 Exonuclease III.
  
    0.478
rlmL
23S rRNA m(2)G2445 methyltransferase; COG0116 Predicted N6-adenine-specific DNA methylase.
  
 
 0.468
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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