STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33463.1DEAD/DEAH box helicase; COG0513 Superfamily II DNA and RNA helicases. (443 aa)    
Predicted Functional Partners:
AGZ33265.1
DEAD/DEAH box helicase; COG0513 Superfamily II DNA and RNA helicases.
  
  
 
0.906
AGZ33516.1
COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase).
  
 0.848
rplD
COG0088 Ribosomal protein L4.
   
 0.747
rplJ
COG0244 Ribosomal protein L10.
   
 0.722
rpmD
COG1841 Ribosomal protein L30/L7E.
   
 0.709
rpsC
COG0092 Ribosomal protein S3.
   
 0.705
rplW
COG0089 Ribosomal protein L23.
   
 0.702
rplV
COG0091 Ribosomal protein L22.
   
 0.699
AGZ33462.1
COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
   0.698
rrmJ
COG0293 23S rRNA methylase.
   
 0.694
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.