STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33487.1COG1620 L-lactate permease. (556 aa)    
Predicted Functional Partners:
lldD
COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
 
  
 0.960
AGZ33485.1
COG0277 FAD/FMN-containing dehydrogenases.
 
  
 0.895
AGZ36304.1
FAD linked oxidase domain-containing protein; COG0277 FAD/FMN-containing dehydrogenases.
 
  
 0.787
AGZ33488.1
GntR domain-containing protein; COG2186 Transcriptional regulators.
 
  
 0.742
glcF
Glycolate oxidase iron-sulfur subunit; COG0247 Fe-S oxidoreductase.
 
  
 0.643
AGZ34937.1
COG0039 Malate/lactate dehydrogenases.
  
  
 0.626
AGZ37025.1
Phosphate acetyltransferase; COG0857 BioD-like N-terminal domain of phosphotransacetylase.
  
  
 0.548
AGZ37007.1
PTS system fructose-specific transporter subunits IIBC; COG1445 Phosphotransferase system fructose-specific component IIB.
  
   
 0.523
putA
Trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; COG0506 Proline dehydrogenase.
   
  
 0.513
AGZ35809.1
COG2186 Transcriptional regulators.
 
  
 0.507
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.