STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33490.1Cyclase/dehydrase; COG2867 Oligoketide cyclase/lipid transport protein. (144 aa)    
Predicted Functional Partners:
AGZ33491.1
COG2914 Uncharacterized protein conserved in bacteria.
 
  
 0.964
smpB
COG0691 tmRNA-binding protein.
  
    0.639
AGZ34105.1
Bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.
  
   
 0.627
AGZ34524.1
COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
  
     0.606
AGZ37714.1
COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
  
   
 0.589
AGZ32888.1
COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
  
     0.554
AGZ33233.1
Ubiquinone biosynthetic 2-octaprenylphenol hydroxylase; COG0661 Predicted unusual protein kinase.
  
 
 
 0.552
AGZ33691.1
COG0625 Glutathione S-transferase.
  
     0.539
ubiA
COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.
  
 
 
 0.472
AGZ37716.1
COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
  
   
 0.431
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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