Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGZ33491.1COG2914 Uncharacterized protein conserved in bacteria. (100 aa)    
Predicted Functional Partners:
AGZ33490.1
Cyclase/dehydrase; COG2867 Oligoketide cyclase/lipid transport protein.
 
  
 0.964
AGZ33900.1
RnfABCDGE type electron transport complex subunit G; COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG.
 
 
 0.866
AGZ33901.1
RnfABCDGE type electron transport complex subunit D; COG4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD.
 
 
 0.860
AGZ33902.1
Lectron transport complex protein RnfB; COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB.
 
   
 0.835
AGZ33903.1
Electron transport complex protein RnfA; COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA.
 
 
 
 0.790
smpB
COG0691 tmRNA-binding protein.
  
    0.749
AGZ33899.1
Hypothetical protein; COG0471 Di- and tricarboxylate transporters.
  
 
 0.719
AGZ33692.1
ClpXP protease specificity-enhancing factor; COG2969 Stringent starvation protein B.
  
     0.525
AGZ33691.1
COG0625 Glutathione S-transferase.
  
     0.426
apaH
COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
  
     0.413
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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