Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33492.1SmpA/OmlA domain-containing protein; COG2913 Small protein A (tmRNA-binding). (176 aa)    
Predicted Functional Partners:
AGZ37159.1
Competence lipoprotein ComL; COG4105 DNA uptake lipoprotein.
  
 0.995
AGZ36670.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
 
 0.989
AGZ35172.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
 
 0.987
AGZ36911.1
Outer membrane assembly lipoprotein YfgL; COG1520 FOG: WD40-like repeat.
  
 
 0.979
AGZ36572.1
Lipoprotein; COG3317 Uncharacterized lipoprotein.
  
 0.971
AGZ37417.1
SurA domain-containing protein; COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
 
 0.944
AGZ33435.1
COG2980 Rare lipoprotein B.
 
 
 0.920
AGZ37416.1
LPS-assembly protein lptD; COG1452 Organic solvent tolerance protein OstA.
  
  
 0.882
AGZ33493.1
COG0735 Fe2+/Zn2+ uptake regulation proteins.
 
  
 0.827
AGZ36851.1
COG1934 Uncharacterized protein conserved in bacteria.
  
  
 0.769
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
Server load: low (12%) [HD]