Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGZ33493.1COG0735 Fe2+/Zn2+ uptake regulation proteins. (134 aa)    
Predicted Functional Partners:
AGZ33492.1
SmpA/OmlA domain-containing protein; COG2913 Small protein A (tmRNA-binding).
 
  
 0.827
hfq
RNA-binding protein Hfq; COG1923 Uncharacterized host factor I protein.
  
  
 0.690
AGZ37730.1
Thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 
 0.597
AGZ33890.1
Anti-oxidant AhpCTSA family protein; COG0450 Peroxiredoxin.
  
  
 0.588
AGZ35954.1
Alkyl hydroperoxide reductase; COG0450 Peroxiredoxin.
  
  
 0.588
AGZ37340.1
COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit.
   
 
 0.587
hemH
Ferrochelatase; COG0276 Protoheme ferro-lyase (ferrochelatase).
      
 0.540
AGZ35081.1
Redoxin domain-containing protein; COG2077 Peroxiredoxin.
   
  
 0.526
rpoZ
COG1758 DNA-directed RNA polymerase, subunit K/omega.
  
 
 0.511
rpoB
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
   
 
 0.506
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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