Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGZ33494.1COG0497 ATPase involved in DNA repair. (557 aa)    
Predicted Functional Partners:
recA
COG0468 RecA/RadA recombinase.
  
  
 0.923
AGZ34384.1
COG5404 SOS-response cell division inhibitor, blocks FtsZ ring formation.
   
  
 0.851
AGZ33495.1
COG0576 Molecular chaperone GrpE (heat shock protein).
     
 0.816
AGZ34385.1
LexA repressor; COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases).
   
  
 0.815
AGZ33497.1
COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain.
     
 0.814
ruvA
COG0632 Holliday junction resolvasome, DNA-binding subunit.
 
  
 0.768
recX
Recombination regulator RecX; COG2137 Uncharacterized protein conserved in bacteria.
  
  
 0.762
AGZ33589.1
DNA repair protein RadA; COG1066 Predicted ATP-dependent serine protease.
  
   
 0.748
uvrC
COG0322 Nuclease subunit of the excinuclease complex.
  
   
 0.747
xseA
COG1570 Exonuclease VII, large subunit.
 
   
 0.746
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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