Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
carACOG0505 Carbamoylphosphate synthase small subunit. (378 aa)    
Predicted Functional Partners:
pyrB
COG0540 Aspartate carbamoyltransferase, catalytic chain.
 
 0.999
carB
COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ).
 0.999
AGZ33885.1
COG0078 Ornithine carbamoyltransferase.
 
 
 0.993
pyrC
COG0044 Dihydroorotase and related cyclic amidohydrolases.
  
 0.984
AGZ34277.1
Amidophosphoribosyltransferase; COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase.
 
 
 0.976
gltB
COG0067 Glutamate synthase domain 1.
    
  0.952
AGZ36814.1
COG0078 Ornithine carbamoyltransferase.
  
 
 0.949
pyrE
COG0461 Orotate phosphoribosyltransferase.
 
  
 0.933
AGZ34141.1
COG0284 Orotidine-5'-phosphate decarboxylase.
  
  
 0.927
AGZ36780.1
COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain.
 
  
 0.925
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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