STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
carBCOG0458 Carbamoylphosphate synthase large subunit (split gene in MJ). (1073 aa)    
Predicted Functional Partners:
pyrB
COG0540 Aspartate carbamoyltransferase, catalytic chain.
 
 0.999
carA
COG0505 Carbamoylphosphate synthase small subunit.
 0.999
AGZ33885.1
COG0078 Ornithine carbamoyltransferase.
 
 
 0.994
AGZ34277.1
Amidophosphoribosyltransferase; COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase.
 
 
 0.992
AGZ33894.1
COG0137 Argininosuccinate synthase.
 
 0.990
gltB
COG0067 Glutamate synthase domain 1.
  
 
 0.986
pyrC
COG0044 Dihydroorotase and related cyclic amidohydrolases.
 
 0.984
pyrE
COG0461 Orotate phosphoribosyltransferase.
  
 
 0.970
AGZ34141.1
COG0284 Orotidine-5'-phosphate decarboxylase.
 
  
 0.963
greA
COG0782 Transcription elongation factor.
  
  
 0.956
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.