STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
greACOG0782 Transcription elongation factor. (160 aa)    
Predicted Functional Partners:
carB
COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ).
  
  
 0.956
AGZ37340.1
COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit.
 
 
 0.910
rpoZ
COG1758 DNA-directed RNA polymerase, subunit K/omega.
 
 
 
 0.900
AGZ37371.1
COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
  
 
 0.895
rpoB
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
  
 
 0.890
AGZ33502.1
Hypothetical protein.
       0.764
carA
COG0505 Carbamoylphosphate synthase small subunit.
     
 0.761
nusG
Transcription antitermination protein NusG; COG0250 Transcription antiterminator.
 
  
 0.737
AGZ34538.1
TraR/DksA family transcriptional regulator; COG1734 DnaK suppressor protein.
  
 
 
 0.727
AGZ33115.1
COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32).
 
   
 0.683
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.