STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrmJCOG0293 23S rRNA methylase. (208 aa)    
Predicted Functional Partners:
AGZ32896.1
16S rRNA methyltransferase B; COG0144 tRNA and rRNA cytosine-C5-methylases.
 
 0.951
rpmD
COG1841 Ribosomal protein L30/L7E.
   
  0.943
rplJ
COG0244 Ribosomal protein L10.
   
 0.917
AGZ33505.1
ATP-dependent metalloprotease FtsH; COG0465 ATP-dependent Zn proteases.
 
 
 0.897
rplW
COG0089 Ribosomal protein L23.
   
  0.895
rplV
COG0091 Ribosomal protein L22.
    
  0.893
AGZ37357.1
COG0255 Ribosomal protein L29.
    
  0.885
AGZ33503.1
COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein.
  
  
 0.804
AGZ36679.1
COG0024 Methionine aminopeptidase.
  
 0.799
thrS
COG0441 Threonyl-tRNA synthetase.
 
  0.797
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.