STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glmMCOG1109 Phosphomannomutase. (446 aa)    
Predicted Functional Partners:
AGZ37906.1
UDP-N-acetylglucosamine pyrophosphorylase; COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains).
 
 
 0.974
AGZ37904.1
Glucosamine--fructose-6-phosphate aminotransferase; COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains.
 
 
 0.959
AGZ33506.1
COG0294 Dihydropteroate synthase and related enzymes.
  
  
 0.887
AGZ33505.1
ATP-dependent metalloprotease FtsH; COG0465 ATP-dependent Zn proteases.
  
  
 0.804
tpiA
COG0149 Triosephosphate isomerase.
   
 
 0.721
AGZ35211.1
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.700
AGZ36841.1
COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase.
 
  
 0.682
murC
COG0773 UDP-N-acetylmuramate-alanine ligase.
  
 
 
 0.681
secG
COG1314 Preprotein translocase subunit SecG.
 
     0.680
AGZ36856.1
glmZ(sRNA)-inactivating NTPase; COG1660 Predicted P-loop-containing kinase.
 
   
 0.652
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.