Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGZ33626.1TonB-dependent siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport. (796 aa)    
Predicted Functional Partners:
AGZ33624.1
ECF subfamily RNA polymerase sigma-24 factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
 
  
 0.797
AGZ33625.1
anti-FecI sigma factor, FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
 
   0.786
AGZ35606.1
anti-FecI sigma factor FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.664
AGZ35533.1
anti-FecI sigma factor FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.638
AGZ36900.1
anti-FecI sigma factor FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.632
AGZ36807.1
anti-FecI sigma factor FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
 
   0.604
AGZ36024.1
TonB-dependent receptor plug; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
  
 0.566
AGZ37806.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
 
 0.565
AGZ37091.1
anti-FecI sigma factor FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.558
AGZ37476.1
anti-FecI sigma factor FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.544
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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