STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33694.1COG2823 Predicted periplasmic or secreted lipoprotein. (192 aa)    
Predicted Functional Partners:
AGZ33695.1
COG0279 Phosphoheptose isomerase.
  
    0.922
AGZ33697.1
LppC family lipoprotein; COG3107 Putative lipoprotein.
  
    0.768
AGZ33696.1
Hypothetical protein; COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase.
       0.752
AGZ33693.1
Hypothetical protein.
  
    0.672
AGZ33698.1
uroporphyrin-III C/tetrapyrrole methyltransferase; COG0313 Predicted methyltransferases.
       0.660
AGZ37159.1
Competence lipoprotein ComL; COG4105 DNA uptake lipoprotein.
  
   
 0.579
AGZ36572.1
Lipoprotein; COG3317 Uncharacterized lipoprotein.
  
  
 0.542
AGZ36420.1
CsbD family protein; COG3237 Uncharacterized protein conserved in bacteria.
  
    0.541
AGZ32966.1
Hypothetical protein.
  
    0.540
AGZ33680.1
COG3105 Uncharacterized protein conserved in bacteria.
  
     0.507
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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