STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33695.1COG0279 Phosphoheptose isomerase. (195 aa)    
Predicted Functional Partners:
AGZ32889.1
D,D-heptose 1,7-bisphosphate phosphatase; COG0241 Histidinol phosphatase and related phosphatases.
  
 0.997
AGZ33316.1
Bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase.
  
 0.995
dnaA
COG0593 ATPase involved in DNA replication initiation.
    
 0.929
AGZ33694.1
COG2823 Predicted periplasmic or secreted lipoprotein.
  
    0.922
AGZ37487.1
Lipopolysaccharide heptosyltransferase II; COG0859 ADP-heptose:LPS heptosyltransferase.
 
   
 0.826
AGZ37486.1
Lipopolysaccharide heptosyltransferase I; COG0859 ADP-heptose:LPS heptosyltransferase.
 
   
 0.823
AGZ33696.1
Hypothetical protein; COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase.
  
    0.813
AGZ33697.1
LppC family lipoprotein; COG3107 Putative lipoprotein.
  
    0.809
AGZ36329.1
COG0514 Superfamily II DNA helicase.
     
  0.805
dnaG
COG0358 DNA primase (bacterial type).
     
 0.799
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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