Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33951.1Hypothetical protein. (38 aa)    
Predicted Functional Partners:
AGZ36090.1
COG3278 Cbb3-type cytochrome oxidase, subunit 1.
    
   0.790
AGZ36093.1
Cytochrome c oxidase, cbb3-type subunit III; COG2010 Cytochrome c, mono- and diheme variants.
    
   0.666
AGZ36097.1
Cytochrome c oxidase, cbb3-type, subunit III; COG2010 Cytochrome c, mono- and diheme variants.
    
   0.666
AGZ36094.1
COG3278 Cbb3-type cytochrome oxidase, subunit 1.
    
   0.628
AGZ33950.1
Hypothetical protein.
       0.531
AGZ36091.1
COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
    
   0.506
AGZ36095.1
COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
    
   0.506
AGZ33953.1
Hypothetical protein.
       0.462
AGZ33952.1
Fusaric acid resistance protein region; COG1289 Predicted membrane protein.
       0.458
AGZ33954.1
Secretion protein HlyD family protein; COG1566 Multidrug resistance efflux pump.
       0.444
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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