STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ33973.1Outer membrane porin. (413 aa)    
Predicted Functional Partners:
AGZ33309.1
LmbE family protein.
  
     0.724
AGZ34055.1
Hypothetical protein.
  
     0.723
AGZ35961.1
Hypothetical protein.
  
     0.712
AGZ37097.1
Hypothetical protein.
  
     0.701
AGZ33651.1
Sel1 domain-containing protein; COG0790 FOG: TPR repeat, SEL1 subfamily.
  
     0.697
AGZ34450.1
CHAD domain-containing protein.
  
     0.685
AGZ33649.1
Carbohydrate-binding and sugar hydrolysis protein.
  
     0.673
AGZ33912.1
Water stress/hypersensitive response domain-containing protein.
  
     0.666
AGZ36017.1
Hypothetical protein.
  
     0.654
AGZ33652.1
Alginate biosynthesis protein alg44; COG0845 Membrane-fusion protein.
  
     0.644
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.