Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGZ34004.1(p)ppGpp synthetase I SpoT/RelA; COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases. (745 aa)    
Predicted Functional Partners:
mazG
Nucleoside triphosphate pyrophosphohydrolase; COG1694 Predicted pyrophosphatase.
 
 
 0.981
AGZ37731.1
COG0248 Exopolyphosphatase.
 
 
 0.932
AGZ37800.1
(p)ppGpp synthetase I SpoT/RelA; COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases.
  
  
 
0.915
ndk
Multifunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase; COG0105 Nucleoside diphosphate kinase.
    
 0.913
cyaA
COG3072 Adenylate cyclase.
     
 0.903
AGZ34824.1
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
 0.821
AGZ37304.1
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
 0.821
rpsF
COG0360 Ribosomal protein S6.
  
 
 
 0.815
AGZ34247.1
COG2896 Molybdenum cofactor biosynthesis enzyme.
    
  0.803
moaA
COG2896 Molybdenum cofactor biosynthesis enzyme.
    
  0.803
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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