Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGZ34064.1Binding-protein-dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II. (264 aa)    
Predicted Functional Partners:
AGZ34065.1
Binding-protein-dependent transport system inner membrane protein; COG4132 ABC-type uncharacterized transport system, permease component.
  
 0.992
AGZ34063.1
ABC transporter ATP-binding protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
 
 0.988
AGZ34067.1
Extracellular solute-binding protein; COG1840 ABC-type Fe3+ transport system, periplasmic component.
   
 0.979
AGZ34066.1
COG1524 Uncharacterized proteins of the AP superfamily.
 
    0.970
AGZ34062.1
HAD superfamily hydrolase; COG0560 Phosphoserine phosphatase.
 
     0.851
AGZ34822.1
Binding-protein-dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.843
AGZ37407.1
Binding-protein-dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.814
AGZ37695.1
Binding-protein-dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.802
AGZ34068.1
COG2188 Transcriptional regulators.
 
  
 0.797
AGZ33085.1
2-aminoethylphosphonate ABC transporter ATP-binding protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
 
 0.764
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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