STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34197.1Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function. (295 aa)    
Predicted Functional Partners:
AGZ33505.1
ATP-dependent metalloprotease FtsH; COG0465 ATP-dependent Zn proteases.
   
 0.640
AGZ33497.1
COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain.
  
 
 0.595
AGZ33495.1
COG0576 Molecular chaperone GrpE (heat shock protein).
  
  
 0.588
AGZ35658.1
ATP-dependent metalloprotease FtsH; COG0465 ATP-dependent Zn proteases.
   
 0.588
AGZ37890.1
ATP-dependent metalloprotease FtsH; COG0465 ATP-dependent Zn proteases.
   
 0.588
AGZ36725.1
COG2979 Uncharacterized protein conserved in bacteria.
  
    0.559
AGZ35999.1
COG0670 Integral membrane protein, interacts with FtsH.
  
  
 0.545
AGZ34198.1
Aminotransferase AlaT; COG0436 Aspartate/tyrosine/aromatic aminotransferase.
   
   0.541
AGZ37310.1
COG3118 Thioredoxin domain-containing protein.
  
  
 0.496
hslU
COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit.
   
  
 0.493
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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