STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34290.1Histidine kinase; COG0642 Signal transduction histidine kinase. (938 aa)    
Predicted Functional Partners:
AGZ34288.1
COG0642 Signal transduction histidine kinase.
 
  
 
0.961
AGZ34289.1
Response regulator receiver modulated diguanylate phosphodiesterase; COG0784 FOG: CheY-like receiver.
  
0.832
AGZ35686.1
Signal transduction histidine kinase with CheB and CheR activity; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
 
0.801
AGZ33286.1
Response regulator receiver modulated; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
0.686
AGZ34292.1
COG3121 P pilus assembly protein, chaperone PapD.
 
     0.667
AGZ35515.1
Hpt sensor hybrid histidine kinase; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 
0.645
AGZ36720.1
CheA signal transduction histidine kinase; COG0643 Chemotaxis protein histidine kinase and related kinases.
 
 
 0.620
AGZ34343.1
PAS/PAC sensor hybrid histidine kinase; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 
0.619
AGZ34287.1
Two component LuxR family transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 
 
 0.602
AGZ35828.1
COG0642 Signal transduction histidine kinase.
 
 
0.595
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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