Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGZ34295.1COG2515 1-aminocyclopropane-1-carboxylate deaminase. (299 aa)    
Predicted Functional Partners:
AGZ36231.1
COG1344 Flagellin and related hook-associated proteins.
     
 0.656
AGZ37666.1
COG0765 ABC-type amino acid transport system, permease component.
  
  
 0.485
AGZ33600.1
Type III effector HopPmaJ.
  
     0.476
AGZ34294.1
COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
       0.474
AGZ37208.1
Hypothetical protein.
 
     0.419
AGZ34560.1
tRNA-hydroxylase; COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA.
  
     0.400
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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