Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34346.1Hypothetical protein. (108 aa)    
Predicted Functional Partners:
AGZ34347.1
COG5393 Predicted membrane protein.
  
    0.940
AGZ34348.1
Hypothetical protein.
  
    0.927
AGZ34349.1
Hypothetical protein; COG0512 Anthranilate/para-aminobenzoate synthases component II.
       0.773
AGZ34345.1
Deoxyguanosinetriphosphate triphosphohydrolase-like protein; COG0232 dGTP triphosphohydrolase.
  
    0.707
AGZ34350.1
Rh family protein/ammonium transporter; COG0004 Ammonia permease.
       0.565
AGZ34351.1
Glutaredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
    0.526
AGZ34352.1
Hypothetical protein.
       0.439
AGZ32917.1
OsmC family protein; COG1764 Predicted redox protein, regulator of disulfide bond formation.
   
    0.438
AGZ34561.1
Hypothetical protein.
  
    0.418
AGZ34353.1
COG0564 Pseudouridylate synthases, 23S RNA-specific.
       0.402
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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