Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGZ34356.123S rRNA C2498 ribose 2'-O-ribose methyltransferase; COG2933 Predicted SAM-dependent methyltransferase. (354 aa)    
Predicted Functional Partners:
AGZ34357.1
Sulfur transfer protein SirA; COG0425 Predicted redox protein, regulator of disulfide bond formation.
       0.763
acnA
Aconitate hydratase; COG1048 Aconitase A.
       0.719
AGZ33117.1
Hypothetical protein; COG2363 Uncharacterized small membrane protein.
  
  
 0.657
AGZ33851.1
tRNA mo(5)U34 methyltransferase; COG0500 SAM-dependent methyltransferases.
   
  
 0.600
AGZ36390.1
Carboxylate/amino acid/amine transporter; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
 
     0.594
AGZ34358.1
COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.
       0.577
AGZ36832.1
COG3081 Nucleoid-associated protein.
  
    0.546
AGZ36304.1
FAD linked oxidase domain-containing protein; COG0277 FAD/FMN-containing dehydrogenases.
  
     0.457
queF
7-cyano-7-deazaguanine reductase; COG2904 Uncharacterized protein conserved in bacteria.
 
    0.436
AGZ37035.1
Ribosomal RNA small subunit methyltransferase C; COG2813 16S RNA G1207 methylase RsmC.
  
   
 0.419
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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