Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34404.1Hypothetical protein; COG0637 Predicted phosphatase/phosphohexomutase. (187 aa)    
Predicted Functional Partners:
AGZ33088.1
Metal dependent phosphohydrolase; COG4341 Predicted HD phosphohydrolase.
 
    0.877
AGZ34403.1
Hypothetical protein.
       0.732
AGZ34529.1
2-aminoethylphosphonate--pyruvate transaminase; COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
 
   
 0.721
AGZ33086.1
COG1178 ABC-type Fe3+ transport system, permease component.
 
     0.686
AGZ33458.1
Hypothetical protein.
 
     0.654
AGZ33087.1
ABC transporter substrate-binding protein; COG1840 ABC-type Fe3+ transport system, periplasmic component.
 
   
 0.643
AGZ33542.1
COG2187 Uncharacterized protein conserved in bacteria.
  
    0.594
AGZ34405.1
VacJ family lipoprotein; COG2853 Surface lipoprotein.
       0.545
AGZ37772.1
Hypothetical protein; COG0727 Predicted Fe-S-cluster oxidoreductase.
 
     0.532
trmB
tRNA (guanine-N(7)-)-methyltransferase; COG0220 Predicted S-adenosylmethionine-dependent methyltransferase.
    
  0.521
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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