STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34408.1COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (160 aa)    
Predicted Functional Partners:
AGZ34407.1
Response regulator receiver modulated serine phosphatase; COG0784 FOG: CheY-like receiver.
 
 
 0.995
AGZ32841.1
Hypothetical protein.
  
 
 0.905
AGZ35828.1
COG0642 Signal transduction histidine kinase.
  
  
 0.885
AGZ34406.1
Type IV pilus assembly PilZ.
 
  
 0.819
AGZ32973.1
Hypothetical protein; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
   
 0.814
AGZ36846.1
Hypothetical protein; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
   
 0.814
AGZ36215.1
COG2198 FOG: HPt domain.
 
  
 0.800
AGZ36216.1
Response regulator receiver protein; COG0784 FOG: CheY-like receiver.
 
 
 0.798
AGZ34302.1
COG3139 Uncharacterized protein conserved in bacteria.
  
     0.754
flgJ
Flagellar rod assembly protein/muramidase FlgJ; COG3951 Rod binding protein.
   
    0.752
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.