Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34409.1Hypothetical protein. (608 aa)    
Predicted Functional Partners:
AGZ34410.1
COG0176 Transaldolase.
       0.584
AGZ36773.1
Hypothetical protein; COG3211 Predicted phosphatase.
 
  
 0.472
AGZ37246.1
N-acetyltransferase GCN5; COG0586 Uncharacterized membrane-associated protein.
     
 0.456
AGZ33778.1
Hypothetical protein; COG3233 Predicted deacetylase.
  
     0.428
AGZ37851.1
COG4395 Uncharacterized protein conserved in bacteria.
  
     0.426
AGZ37213.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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