Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34410.1COG0176 Transaldolase. (308 aa)    
Predicted Functional Partners:
AGZ33280.1
COG0021 Transketolase.
 
 0.997
pgi
COG0166 Glucose-6-phosphate isomerase.
  
 0.987
tpiA
COG0149 Triosephosphate isomerase.
  
 0.982
AGZ33285.1
COG0191 Fructose/tagatose bisphosphate aldolase.
  
 0.963
AGZ33201.1
COG0158 Fructose-1,6-bisphosphatase.
  
 
 0.938
AGZ33186.1
COG0696 Phosphoglyceromutase.
   
 0.934
AGZ35660.1
COG3957 Phosphoketolase.
    
 0.928
AGZ35560.1
COG0033 Phosphoglucomutase.
  
 0.922
eno
Enolase; COG0148 Enolase.
   
 0.912
AGZ33771.1
COG0469 Pyruvate kinase.
  
 0.896
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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