STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34411.1COG0042 tRNA-dihydrouridine synthase. (336 aa)    
Predicted Functional Partners:
AGZ34410.1
COG0176 Transaldolase.
       0.697
truB
COG0130 Pseudouridine synthase.
  
  
 0.657
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; COG0761 Penicillin tolerance protein.
 
  
 0.637
AGZ36929.1
COG0565 rRNA methylase.
  
   
 0.617
trmB
tRNA (guanine-N(7)-)-methyltransferase; COG0220 Predicted S-adenosylmethionine-dependent methyltransferase.
  
 
 0.511
truA
COG0101 Pseudouridylate synthase.
  
 
 0.501
AGZ33990.1
tRNA 2-thiocytidine biosynthesis protein TtcA; COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control.
 
  
 0.497
AGZ36027.1
COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases.
  
    0.483
fis
Global DNA-binding transcriptional dual regulator Fis; COG2901 Factor for inversion stimulation Fis, transcriptional activator.
  
  
 0.447
AGZ32896.1
16S rRNA methyltransferase B; COG0144 tRNA and rRNA cytosine-C5-methylases.
  
 
 0.437
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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