STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGZ34411.1COG0042 tRNA-dihydrouridine synthase. (336 aa)    
Predicted Functional Partners:
fis
Global DNA-binding transcriptional dual regulator Fis; COG2901 Factor for inversion stimulation Fis, transcriptional activator.
  
  
 0.669
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; COG0761 Penicillin tolerance protein.
      0.635
AGZ34410.1
COG0176 Transaldolase.
       0.510
truB
COG0130 Pseudouridine synthase.
  
  
 0.508
guaA
COG0518 GMP synthase - Glutamine amidotransferase domain.
  
  
 0.500
AGZ36027.1
COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases.
  
  
 0.484
panC
Pantoate--beta-alanine ligase; COG0414 Panthothenate synthetase.
  
    0.462
hslO
Hsp33-like chaperonin; COG1281 Disulfide bond chaperones of the HSP33 family.
 
  
 0.446
truA
COG0101 Pseudouridylate synthase.
  
 
 0.442
AGZ32896.1
16S rRNA methyltransferase B; COG0144 tRNA and rRNA cytosine-C5-methylases.
  
 
 0.438
Your Current Organism:
Pseudomonas sp. VLB120
NCBI taxonomy Id: 69328
Other names: P. sp. VLB120
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